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A
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B
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C
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D
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E
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F
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G
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H
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L
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M
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N
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R
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S
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T
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W
A
add_noise() (in module scSLAT.model.utils)
alpha_shape() (in module scSLAT.model.prematch.utils)
B
build_3D (class in scSLAT.viz.multi_dataset)
C
Cal_Spatial_Net() (in module scSLAT.model.preprocess)
calc_k_neighbor() (in module scSLAT.model.utils)
calc_NMI() (in module scSLAT.metrics)
check_align() (in module scSLAT.model.train)
CombUnweighted (class in scSLAT.model.graphconv.combnet)
D
draw_3D() (scSLAT.viz.multi_dataset.build_3D method)
(scSLAT.viz.multi_dataset.match_3D_multi method)
draw_lines() (scSLAT.viz.multi_dataset.match_3D_celltype method)
(scSLAT.viz.multi_dataset.match_3D_multi method)
(scSLAT.viz.multi_dataset.match_3D_multi_error method)
dual_pca() (in module scSLAT.model.batch)
E
edge_score() (in module scSLAT.metrics)
euclidean_dis() (in module scSLAT.metrics)
F
feature_reconstruct_loss() (in module scSLAT.model.loss)
forward() (scSLAT.model.graphconv.combnet.CombUnweighted method)
(scSLAT.model.graphmodel.LGCN method)
(scSLAT.model.graphmodel.LGCN_mlp method)
(scSLAT.model.graphmodel.notrans method)
(scSLAT.model.graphmodel.ReconDNN method)
(scSLAT.model.graphmodel.transformation method)
(scSLAT.model.graphmodel.WDiscriminator method)
G
get_color() (in module scSLAT.viz.multi_dataset)
get_free_gpu() (in module scSLAT.utils)
global_score() (in module scSLAT.metrics)
global_seed() (in module scSLAT.utils)
H
hist() (in module scSLAT.viz)
hit_celltype() (in module scSLAT.metrics)
hit_k() (in module scSLAT.metrics)
L
LGCN (class in scSLAT.model.graphmodel)
LGCN_mlp (class in scSLAT.model.graphmodel)
load_anndata() (in module scSLAT.model.loaddata)
load_anndatas() (in module scSLAT.model.loaddata)
M
make_ground() (in module scSLAT.viz)
match_3D_celltype (class in scSLAT.viz.multi_dataset)
match_3D_multi (class in scSLAT.viz.multi_dataset)
match_3D_multi_error (class in scSLAT.viz.multi_dataset)
message() (scSLAT.model.graphconv.combnet.CombUnweighted method)
module
scSLAT
scSLAT.metrics
scSLAT.model
scSLAT.model.batch
scSLAT.model.graphconv
scSLAT.model.graphconv.combnet
scSLAT.model.graphmodel
scSLAT.model.loaddata
scSLAT.model.loss
scSLAT.model.prematch
scSLAT.model.prematch.icp
scSLAT.model.prematch.utils
scSLAT.model.preprocess
scSLAT.model.train
scSLAT.model.utils
scSLAT.utils
scSLAT.viz
scSLAT.viz.color
scSLAT.viz.multi_dataset
multi_Sankey() (in module scSLAT.viz.multi_dataset)
N
norm_to_raw() (in module scSLAT.utils)
notrans (class in scSLAT.model.graphmodel)
R
ReconDNN (class in scSLAT.model.graphmodel)
region_statistics() (in module scSLAT.metrics)
rotate_via_numpy() (in module scSLAT.model.prematch.utils)
run_LGCN() (in module scSLAT.model.utils)
run_SLAT() (in module scSLAT.model.utils)
run_SLAT_multi() (in module scSLAT.model.utils)
S
Sankey() (in module scSLAT.viz.multi_dataset)
scanpy_workflow() (in module scSLAT.model.preprocess)
scSLAT
module
scSLAT.metrics
module
scSLAT.model
module
scSLAT.model.batch
module
scSLAT.model.graphconv
module
scSLAT.model.graphconv.combnet
module
scSLAT.model.graphmodel
module
scSLAT.model.loaddata
module
scSLAT.model.loss
module
scSLAT.model.prematch
module
scSLAT.model.prematch.icp
module
scSLAT.model.prematch.utils
module
scSLAT.model.preprocess
module
scSLAT.model.train
module
scSLAT.model.utils
module
scSLAT.utils
module
scSLAT.viz
module
scSLAT.viz.color
module
scSLAT.viz.multi_dataset
module
spatial_match() (in module scSLAT.model.utils)
sym_norm() (in module scSLAT.model.graphconv.combnet)
T
train_GAN() (in module scSLAT.model.train)
train_reconstruct() (in module scSLAT.model.train)
Transfer_pyg_Data() (in module scSLAT.model.loaddata)
transformation (class in scSLAT.model.graphmodel)
W
WDiscriminator (class in scSLAT.model.graphmodel)
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