scSLAT.utils.norm_to_raw

scSLAT.utils.norm_to_raw(adata, library_size='total_counts', check_size=100)[source]

Convert normalized adata.X to raw counts

Parameters:

adata (anndata._core.anndata.AnnData) – adata to be convert
library_size (typing.Union[str, numpy.ndarray, None]) – raw library size of every cells, can be a key of adata.obs or a array
check_size (typing.Optional[int]) – check the head [0:check_size] row and column to judge if adata normed

Return type:

anndata._core.anndata.AnnData

Note

Adata must follow scanpy official norm step