Datasets

By courtesy of the original authors, we provide here the following preprocessed data files used in our paper:

Note

we do some necessary pre-handle of these data, if you want to get the processed data, please contact us!

Index

Paper

Species

Tissue

Technology

Resolution

Cells/Spots

Genes

Download

1

Chen et al.

Mouse

Whole embryo

Stereo-seq

0.2μm

5000-100,000

>20,000

website

2

Lohoff et al.

Mouse

Whole embryo

seqFISH

subcellular

~10,000

351

website

3

Deng et al.

Mouse

Whole embryo

spatial-ATAC-seq

20μm

2099

>20,000

website

4

Jeffrey et al.

Mouse

Brain(hypothalamic preoptic)

MERFISH

subcellular

~6,500

151

website

5

Kristen et al.

Human

Brain(dorsolateral prefrontal cortex, DLPFC)

10x Visium

50μm

~3500

>20,000

website

6

Amanda et al.

Human

Breast cancer

10x Visium

50μm

~3500

>20,000

website

7

Amanda et al.

Human

Breast cancer

10x Xenium

subcellular

> 140,000

311

website