SLAT has a wide range of application scenarios in spatial alignment, especially in heterogeneous alignment. We provide following tutorials for you to get started with it.

Basic Usage

Two slices alignment

We show how to use SLAT to align two spatial slices. You can find basic usages of SLAT in this tutorial.

Multiple slices alignment

SLAT can also align multiple datasets once, which is important for 3D structure reconstruction.

Heterogeneous alignment

Cross-technology alignment

We show how to use SLAT to align heterogeneous 10x Visium and 10x Xenium data in this tutorial.

Define spatial dynamics regions

In this tutorial, we focus on finding dynamic regions in embryo development via SLAT.

Pre-match (Optional)

We show how does pre-match function work in this tutorial.