scSLAT.model.preprocess.scanpy_workflow

scSLAT.model.preprocess.scanpy_workflow(adata, n_top_genes=2500, n_comps=50)

Scanpy workflow using Seurat HVG

Parameters:

• adata (anndata._core.anndata.AnnData) – adata

• n_top_genes (typing.Optional[int]) – n top genes

• n_comps (typing.Optional[int]) – n PCA components

Return type:

anndata._core.anndata.AnnData

Returns:

anndata object