scSLAT.viz.multi_dataset.build_3D

class scSLAT.viz.multi_dataset.build_3D(adatas, mappings, spatial_key='spatial', anno_key='annotation', subsample_size=200, scale_coordinate=True)

Bases: object

Build 3D pics/models from multi-datasets

Parameters:

• datasets – list adata of in order

• mappings (typing.List[numpy.ndarray]) – list of SLAT results

• spatial_key (typing.Optional[str]) – obsm key of spatial info

• anno_key (typing.Optional[str]) – obs key of cell annotation such as celltype

• subsample_size (typing.Optional[int]) – subsample size of matches

• scale_coordinate (typing.Optional[bool]) – scale the coordinate from different slides

Methods

draw_3D

Draw 3D picture of two layers